Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17255527 | chr14:59741542 | A/T | 1.39E-8 | 490 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs17255534 | chr14:59745532 | C/T | 1.39E-8 | 489 | 16.38 | 12.7 | 5.45 | KM Plot |
| THCA | rs17255548 | chr14:59759818 | A/G | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs17255583 | chr14:59763748 | C/T | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs17255610 | chr14:59775562 | G/A | 1.4E-8 | 487 | 16.38 | 12.7 | 5.45 | KM Plot |
| THCA | rs17272889 | chr19:53684222 | C/T | 1.88E-5 | 490 | 21.02 | 16.07 | 15.7 | KM Plot |
| THCA | rs17277837 | chr14:23222422 | A/G | 1.67E-9 | 487 | 15.3 | 17.05 | 19.02 | KM Plot |
| THCA | rs17288852 | chr3:56654703 | T/C | 4.14E-6 | 485 | 16.83 | 12.53 | 8.47 | KM Plot |
| THCA | rs17306130 | chr6:24430848 | C/T | 5.74E-7 | 481 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs17317288 | chr3:14575244 | A/G | 1.53E-6 | 482 | 16.65 | 15.07 | 14.52 | KM Plot |
| THCA | rs17317323 | chr3:14575333 | C/T | 1.53E-6 | 482 | 16.65 | 15.07 | 14.52 | KM Plot |
| THCA | rs17337746 | chr3:139268669 | T/C | 4.78E-6 | 487 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs17358122 | chr1:41691323 | C/T | 2.8E-7 | 490 | 14.92 | 17.77 | 17.47 | KM Plot |
| THCA | rs17395820 | chr2:48077179 | G/C | 1.26E-7 | 484 | 15.3 | 19.47 | 8.27 | KM Plot |
| THCA | rs17396994 | chr1:86244639 | A/G | 0.000191 | 488 | 16.02 | 15.42 | 7.13 | KM Plot |